## Install RnBeads if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager", repos="http://cran.rstudio.com") BiocManager::install(c("RnBeads", "RnBeads.hg19", "RnBeads.mm10", "RnBeads.hg38"), dependencies = TRUE, quiet = TRUE) # source("http://bioconductor.org/biocLite.R") # biocLite(c("RnBeads", "RnBeads.hg19", "RnBeads.mm10"), dependencies = TRUE, quiet = TRUE) suppressPackageStartupMessages(library(RnBeads)) txt <- c("\nHow to test if RnBeads is correctly installed?", "1. Check out our FAQ items on Ghostscript and ZIP by visiting:", "https://rnbeads.org/faq.html", "2. Check out the documentation:", 'vignette("RnBeads")', "3. Start the RnBeads Data Juggler:", "rnb.run.dj()\n") cat(paste0(txt, collapse = "\n")) rm(txt)