This section presents a summary of the data import step.
Data type | .idat files |
Data source | data |
Number of samples | 125 |
Number of probes | 485577 |
Detection p-values | present |
bead counts information is | present |
Quality control information | absent |
The loaded dataset includes a table of sample annotations describing the following traits:
No. | Trait | Missing Values | Type |
1 | TCGA ID | identifiers or text | |
2 | Patient ID | categories or text | |
3 | barcode | identifiers or text | |
4 | Sentrix ID | numbers | |
5 | Sentrix position | categories or text | |
6 | Type | categories or text | |
7 | Study | all identical | |
8 | BCR sample barcode | identifiers or text | |
9 | Initial weight | 125 | all missing |
10 | Freezing method | all identical | |
11 | Time between clamping and freezing | 125 | all missing |
12 | Time between excision and freezing | 125 | all missing |
13 | BCR patient barcode | 6 | categories or text |
14 | Gender | 6 | categories or text |
15 | Ethnicity | 49 | categories or text |
16 | Race | 14 | categories or text |
17 | Days to birth | 6 | numbers |
18 | Days to death | 60 | numbers |
19 | Days to last known alive | 125 | all missing |
20 | Vital status | 6 | categories or text |
21 | IDH1 | 11 | categories or text |
22 | G-CIMP status | categories or text | |
23 | Predicted Male Probability | numbers or identifiers | |
24 | Predicted Gender | categories or text |
The full sample annotation table is available as a comma-separated value file accompanying this report.