Data Import

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This section presents a summary of the data import step.

Data type .idat files
Data source data
Number of samples 125
Number of probes 485577
Detection p-values present
bead counts information is present
Quality control information absent

Sample Annotation

The loaded dataset includes a table of sample annotations describing the following traits:

No. Trait Missing Values Type
1 TCGA ID identifiers or text
2 Patient ID categories or text
3 barcode identifiers or text
4 Sentrix ID numbers
5 Sentrix position categories or text
6 Type categories or text
7 Study all identical
8 BCR sample barcode identifiers or text
9 Initial weight 125 all missing
10 Freezing method all identical
11 Time between clamping and freezing 125 all missing
12 Time between excision and freezing 125 all missing
13 BCR patient barcode 6 categories or text
14 Gender 6 categories or text
15 Ethnicity 49 categories or text
16 Race 14 categories or text
17 Days to birth 6 numbers
18 Days to death 60 numbers
19 Days to last known alive 125 all missing
20 Vital status 6 categories or text
21 IDH1 11 categories or text
22 G-CIMP status categories or text
23 Predicted Male Probability numbers or identifiers
24 Predicted Gender categories or text

The full sample annotation table is available as a comma-separated value file accompanying this report.