Data Import

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This section presents a summary of the data import step.

Data type Bisulfite sequencing data set
Data source data
Genome assembly used mm9
Number of samples 38
Number of sites 2145307
Detection p-values absent
coverage information is present

Sample Annotation

The loaded dataset includes a table of sample annotations describing the following traits:

No. Trait Missing Values Type
1 sampleID identifiers or text
2 description categories or text
3 filename_bed identifiers or text
4 tissue categories or text
5 differentiation_level categories or text
6 differentiation_level_blood 12 categories or text
7 differentiation_level_skin 26 categories or text
8 blood_lineage 12 categories or text
9 cmp_blood_stemCell_vs_differentiated 24 categories or text
10 cmp_blood_progenitor_vs_differentiated 14 categories or text
11 cmp_blood_stemCell_vs_progenitor 24 categories or text
12 cmp_skin_stemCell_vs_differentiated 30 categories or text
13 cmp_skin_progenitor_vs_differentiated 30 categories or text
14 cmp_skin_stemCell_vs_progenitor 30 categories or text
15 cmp_blood_HSC_vs_MPP1 34 categories or text
16 cmp_blood_MPP1_vs_MPP2 34 categories or text
17 cmp_blood_MPP2_vs_CLP 34 categories or text
18 cmp_blood_MPP2_vs_CMP 34 categories or text
19 cmp_blood_CLP_vs_CD4 34 categories or text
20 cmp_blood_CLP_vs_CD8 34 categories or text
21 cmp_blood_CLP_vs_Bcell 34 categories or text
22 cmp_blood_CMP_vs_GMP 34 categories or text
23 cmp_blood_CMP_vs_MEP 34 categories or text
24 cmp_blood_GMP_vs_Granu 34 categories or text
25 cmp_blood_GMP_vs_Mono 34 categories or text
26 cmp_blood_MEP_vs_Eryth 34 categories or text
27 cmp_blood_CLP_CMP 34 categories or text
28 cmp_skin_TBSC_vs_ABSC 34 categories or text
29 cmp_skin_ABSC_vs_MTAC 34 categories or text
30 cmp_skin_ABSC_vs_Epro 34 categories or text
31 cmp_skin_ABSC_vs_Edif 34 categories or text
32 cmp_skin_MTAC_vs_CLDC 34 categories or text
33 Predicted Male Probability numbers or identifiers
34 Predicted Gender categories or text

The full sample annotation table is available as a comma-separated value file accompanying this report.