Tracks and Tables

Methylation Data

Methylation Data was exported to the following formats:

Sample summary

This section contains summary metrics for each sample as well as links to exported files. The summary table below contains the following metrics. It is also available as csv file.

Bed files for each sample contain the locations of methylation sites and regions the methylation level (in the score column). The following table links to the files. The files can be quite large in size, so you might want to consider using the "save as" option instead of opening the links directly.

sampleName sites_bigBedFile sites_bedFile sites_num sites_covgMean sites_covgMedian sites_covgPerc25 sites_covgPerc75 sites_numCovg5 sites_numCovg10 sites_numCovg30 sites_numCovg60 tiling_num tiling_covgMean tiling_covgMedian tiling_covgPerc25 tiling_covgPerc75 tiling_numCovg5 tiling_numCovg10 tiling_numCovg30 tiling_numCovg60 tiling_numSitesMean tiling_numSitesMedian tiling_numSites2 tiling_numSites5 tiling_numSites10 tiling_numSites20 genes_num genes_covgMean genes_covgMedian genes_covgPerc25 genes_covgPerc75 genes_numCovg5 genes_numCovg10 genes_numCovg30 genes_numCovg60 genes_numSitesMean genes_numSitesMedian genes_numSites2 genes_numSites5 genes_numSites10 genes_numSites20 promoters_num promoters_covgMean promoters_covgMedian promoters_covgPerc25 promoters_covgPerc75 promoters_numCovg5 promoters_numCovg10 promoters_numCovg30 promoters_numCovg60 promoters_numSitesMean promoters_numSitesMedian promoters_numSites2 promoters_numSites5 promoters_numSites10 promoters_numSites20 cpgislands_num cpgislands_covgMean cpgislands_covgMedian cpgislands_covgPerc25 cpgislands_covgPerc75 cpgislands_numCovg5 cpgislands_numCovg10 cpgislands_numCovg30 cpgislands_numCovg60 cpgislands_numSitesMean cpgislands_numSitesMedian cpgislands_numSites2 cpgislands_numSites5 cpgislands_numSites10 cpgislands_numSites20
HSC_1 bigBed bed 1188173 66.7987128137064 56 29 89 1188173 1112460 889638 554158 147893 537.963446545814 160 80 394 147893 145511 135222 120835 7.20200232715989 3 132503 55989 27187 13609 20609 2628.64995875588 1705 493 3637 20609 20524 20176 19709 36.3710109507919 23 20104 17603 15063 11603 18079 2072.8560761104 1612 410.5 3165.5 18079 17984 17519 16999 24.3734293675411 18 17516 14712 12223 8983 14033 2697.4791562745 2124 1016 3743 14033 14020 13940 13797 32.8364234240537 25 13939 13324 11722 8527
HSC_2 bigBed bed 1231118 78.281529471586 66 35 105 1231118 1166208 976542 681800 152743 632.012805824162 205 103 483 152743 150554 141224 129521 7.46232909919519 3 136402 58340 28290 14000 20815 3090.18116742734 2027 594 4259 20815 20737 20421 20031 37.6895708981529 24 20279 17812 15312 11856 18392 2355.58182905611 1829 470 3605 18392 18288 17854 17349 24.9095736291467 18 17742 14885 12404 9170 14121 3077.44260321507 2434 1179 4266 14121 14112 14047 13918 33.4624641432869 25 14032 13422 11869 8700
MPP1_1 bigBed bed 1307138 100.286998006331 81 42 132 1307138 1267660 1091679 824886 159538 822.219822236709 317 158 733 159538 158026 152393 145352 7.92308251721129 3 143475 63002 30812 14884 21084 4082.81393473724 2710 868.75 5492.25 21084 21032 20850 20604 39.7000516990177 25 20524 18061 15584 12195 18735 2748.38025086736 2156 624 4162 18735 18674 18416 18062 25.277587929131 19 18088 15134 12555 9280 14207 3560.24107834166 2837 1420.5 4918.5 14207 14197 14143 14074 33.8446092492829 26 14119 13548 12005 8798
MPP1_2 bigBed bed 1288158 93.4669031283429 79 42 126 1288158 1247772 1075182 808145 157304 766.039464984997 273 141 659 157304 155633 149593 142229 7.80805173082517 3 140314 61839 30441 14754 21007 3807.84176703004 2502 788 5140 21007 20949 20745 20481 39.1705597593646 25 20463 17981 15505 12099 18608 2648.93502794497 2042.5 579 4044 18608 18530 18266 17922 25.095578571053 19 17980 15051 12492 9210 14177 3468.464414192 2757 1352 4801 14177 14167 14111 14040 33.6546561253761 25 14092 13513 11957 8742
MPP2_1 bigBed bed 1231100 96.8456461700918 82 44 130 1231100 1189988 1039324 799882 150339 793.81402031409 257 127 639 150339 148864 143249 134917 7.46222607388733 3 136174 58656 28969 14197 20694 3872.60558616024 2503 760 5330 20694 20643 20451 20179 37.3345866428538 23 20224 17711 15183 11731 18176 2882.87235915493 2185 594 4396.25 18176 18104 17834 17513 24.3236422901004 18 17634 14791 12201 8940 14020 3792.65242510699 2952 1403 5285.25 14020 14010 13962 13878 32.7693976072203 25 13938 13354 11728 8495
MPP2_2 bigBed bed 1254119 87.2325098335963 74 42 117 1254119 1214617 1055759 771816 152944 715.983601841197 244 123 593 152944 151300 145691 137088 7.60172840104722 3 137634 59955 29571 14438 20805 3503.92477769767 2284 711 4785 20805 20748 20555 20280 38.0826714292428 24 20303 17808 15313 11870 18338 2531.74288362962 1936 540 3862 18338 18257 18016 17669 24.6454445087009 18 17770 14903 12324 9051 14081 3324.8335345501 2612 1263 4613 14081 14073 14026 13949 33.1472748898062 25 14002 13432 11824 8601
CLP_1 bigBed bed 1269697 42.8136736559982 38 21 57 1269697 1182638 786310 287640 157862 345.358984429438 102 43 265 157862 154205 136014 103326 7.69611170367497 3 136860 60231 30116 14700 21066 1778.07296116966 1078 315 2440 21066 20940 20398 19608 38.6542275696762 24 20390 17903 15442 12041 18733 1312.15891741846 910 222 1991 18733 18558 17857 16908 24.9208769255034 19 17900 15011 12508 9201 14235 1788.04285212504 1327 611 2489 14235 14216 14093 13912 33.55201847058 25 14143 13533 11984 8747
CLP_2 bigBed bed 1325939 34.3737577671371 30 17 46 1325939 1222983 666479 160159 163937 278.535053099666 102 52 242 163937 161306 144972 113132 8.03703456802094 3 147635 64472 31358 14963 21241 1420.81855844828 899 287 1924 21241 21155 20619 19763 40.0674437185694 26 20678 18151 15664 12299 18932 954.900433129094 697 194 1444 18932 18833 18063 17012 25.1510961568792 19 18226 15218 12609 9296 14255 1272.03732023851 976 463 1764 14255 14235 14077 13835 33.5578255089904 25 14159 13558 12012 8765
CMP_1 bigBed bed 1302557 41.7158074464304 36 21 56 1302557 1207676 787862 283961 161299 337.660624058426 109 48 280 161299 157574 141200 108826 7.89531416658586 3 142749 62524 30812 14851 21157 1727.01564494021 1067 326 2362 21157 21053 20509 19777 39.5037364290079 25 20540 18059 15561 12193 18843 1206.08247094412 853 225 1829.5 18843 18656 17964 17028 25.1121917880238 19 18080 15117 12541 9268 14255 1631.260680463 1231 574 2257 14255 14228 14107 13891 33.6733365983348 26 14163 13553 11996 8758
CMP_2 bigBed bed 1339255 38.1107645668674 34 21 50 1339255 1269805 770488 208367 164560 310.464462809917 115 59 270 164560 162594 149331 122448 8.11774580626394 3 148895 65132 31718 15128 21255 1585.52317101858 1006 321 2140 21255 21195 20751 20023 40.4731870094468 26 20702 18200 15718 12351 18984 1057.71639275179 773 219 1601 18984 18889 18253 17330 25.3339466905 19 18296 15227 12659 9330 14273 1411.85041687102 1083 520 1955 14273 14243 14134 13921 33.7975232631358 26 14177 13579 12046 8803
GMP_1 bigBed bed 1271644 46.1041966147758 40 22 61 1271644 1186198 816738 342277 157051 374.327829813245 114 47 291 157051 153659 137881 107148 7.70793537283041 3 138176 60451 30007 14658 21007 1916.99200266578 1175 347 2640.5 21007 20916 20414 19697 38.6906048785073 24 20404 17912 15439 12053 18652 1410.93314389878 998.5 245.75 2143 18652 18498 17862 17017 24.9521055675306 19 17892 15024 12456 9180 14204 1907.8781329203 1428 656 2656 14204 14190 14068 13906 33.5689498355839 25 14113 13504 11958 8728
GMP_2 bigBed bed 1338954 40.8275639043612 35 21 54 1338954 1265170 795842 264668 164328 332.973017379874 110 55 267 164328 162067 147620 117205 8.11592771259575 3 148530 64996 31631 15131 21248 1738.10372740964 1083.5 329 2375.25 21248 21192 20700 19977 40.4781219156836 26 20700 18205 15716 12354 18975 1223.88574440053 875 226 1857 18975 18874 18229 17273 25.4243204878818 19 18289 15258 12650 9368 14269 1650.66858224122 1252 582 2295 14269 14254 14127 13924 33.9163226754355 26 14176 13585 12049 8816
MEP_1 bigBed bed 1298961 45.4490488936927 40 23 61 1298961 1222040 838210 342717 160692 368.148501481094 117 51 301 160692 157344 142149 111317 7.87349704256763 3 141386 62032 30729 14872 21154 1910.68365320979 1189 359 2622 21154 21059 20564 19900 39.4721530290924 25 20518 18044 15581 12198 18843 1354.90320012737 961 250 2057 18843 18697 18076 17217 25.1905788339204 19 18065 15129 12582 9278 14259 1829.79058840031 1383 649.5 2537.5 14259 14237 14140 13964 33.7978031204086 26 14166 13567 12030 8784
MEP_2 bigBed bed 1330800 39.3923519687406 33 19 53 1330800 1234113 741793 254289 164092 319.92727859981 110 51 269 164092 161176 145570 113457 8.06648768544555 3 147885 64652 31488 15045 21236 1667.7920983236 1048 325 2271 21236 21157 20637 19870 40.2278046717112 26 20682 18173 15697 12315 18963 1147.6594420714 823 218 1732.5 18963 18824 18132 17161 25.249355974975 19 18264 15231 12621 9312 14262 1537.32947693171 1170 543 2131 14262 14243 14102 13873 33.686839711747 26 14166 13564 12023 8783
CD4_1 bigBed bed 1303422 51.376775902202 45 27 69 1303422 1241803 929598 446726 161040 416.511177347243 130 61 332 161040 158118 145651 122662 7.90053815572578 3 141750 62285 30813 14920 21160 2139.34744801512 1325 397 2925.25 21160 21079 20620 20073 39.5920947501997 25 20531 18048 15585 12217 18861 1538.46651821218 1090 278 2336 18861 18725 18169 17380 25.2643394143315 19 18068 15134 12595 9311 14264 2088.42786034773 1579 747 2892 14264 14247 14164 14002 33.8968026306584 26 14174 13574 12051 8795
CD4_2 bigBed bed 1337138 39.3446315937472 34 21 52 1337138 1268130 781574 231869 163941 321.224519796756 115 61 268 163941 161955 149027 124832 8.10491006496655 3 148615 64889 31588 15110 21224 1635.65397663023 1023.5 322 2203.25 21224 21160 20711 20011 40.410020209616 26 20685 18194 15700 12333 18951 1125.90660123476 816 219 1713.5 18951 18851 18252 17339 25.3913043478261 19 18268 15236 12644 9335 14265 1508.64984227129 1142 540 2080 14265 14245 14128 13916 33.8842090533828 26 14171 13575 12048 8820
CD8_1 bigBed bed 1303964 47.7112573660009 41 22 66 1303964 1220413 847553 398449 161228 386.606792864763 123 61 309 161228 158165 144174 122340 7.9038289052652 3 142262 62396 30754 14898 21167 1985.84201823593 1245 370 2714 21167 21087 20596 19987 39.5797809841613 25 20535 18053 15587 12221 18862 1430.26306860354 1026 261 2183 18862 18724 18108 17278 25.2699122023027 19 18069 15146 12603 9323 14262 1930.96907867059 1469 684 2683 14262 14243 14134 13956 33.8586720772406 26 14170 13573 12045 8816
CD8_2 bigBed bed 1324853 35.0172864461189 30 18 47 1324853 1222548 677645 170130 163718 283.893371529093 102 54 239 163718 161029 145317 115551 8.03044700862988 3 147494 64353 31260 14962 21227 1439.89965609837 899 283 1937.5 21227 21128 20593 19804 40.0141937303191 25 20667 18143 15670 12298 18941 984.171374267462 713 194 1489 18941 18804 18047 17023 25.1882656011776 19 18217 15224 12610 9293 14261 1317.04487763831 1001 473 1818 14261 14239 14084 13831 33.6039319946827 25 14164 13565 12004 8767
B_cell_1 bigBed bed 1307175 48.3479656511179 41 24 65 1307175 1238062 868126 397723 161386 392.259687953106 110 55 287 161386 158352 143452 114916 7.92329462813924 3 141730 62478 30894 14943 21170 2059.36854038734 1260 356 2849 21170 21084 20621 19906 39.722940264135 25 20533 18062 15604 12250 18867 1540.23400646632 1078 254 2353.5 18867 18746 18143 17215 25.3374691130855 19 18072 15156 12600 9337 14265 2107.41577287066 1591 730 2933 14265 14249 14161 13994 33.9697754145386 26 14178 13573 12058 8823
B_cell_2 bigBed bed 1331602 35.3139774497185 31 18 47 1331602 1239530 698404 167973 164011 287.139167494863 104 55 244 164011 161358 146403 117030 8.07136017647629 3 148115 64666 31441 15027 21224 1458.96287222013 918 291 1966.25 21224 21142 20628 19827 40.2217887860131 26 20672 18164 15687 12315 18953 990.693504986018 721 198 1507 18953 18837 18143 17100 25.2908364439304 19 18256 15233 12627 9306 14264 1324.41397924846 1010 483 1835.25 14264 14238 14115 13870 33.7408521653957 26 14171 13574 12034 8792
Eryth_1 bigBed bed 1126422 20.9742361210985 17 11 25 1126422 914925 186892 14823 160021 149.23460670787 56 28 130 160021 154479 116487 76929 6.82772350431494 3 139771 56575 26431 12621 21113 766.067967602899 469 156 993 21113 20950 19931 18558 33.9686515956197 22 20398 17700 15055 11276 18789 498.556921603066 347 106 705 18789 18563 17258 15710 20.8887019609905 16 17905 14690 11959 8184 14217 654.926988816206 467 226 855 14217 14188 13885 13457 27.7080389001609 21 14075 13269 11312 7665
Eryth_2 bigBed bed 843756 13.3870633216238 10 7 14 843756 443392 23147 6695 140105 86.2200849362978 32 15 73 140105 127379 73916 42393 5.11435203141666 2 108722 43446 20197 9587 20446 407.4537806906 240 85 496 20446 20141 18394 16501 25.9172345725431 16 19489 16661 13740 9568 17878 275.801487862177 180.5 62 357 17878 17460 15511 13526 16.3500341727564 12 16771 13703 10749 6521 13863 356.750342638678 231 115 428 13863 13810 13307 12277 21.6076401035472 17 13653 12555 10159 6191
Gran_1 bigBed bed 1276924 43.6150381698519 38 21 59 1276924 1185950 789068 311786 158474 352.420567411689 108 45 281 158474 154784 137783 105566 7.73993988170271 3 138539 60691 30224 14697 21092 1771.37032998293 1081 323 2417 21092 20960 20427 19670 38.7958828782253 25 20424 17943 15455 12061 18764 1268.07167981241 894.5 226 1923 18764 18583 17867 16923 24.9642500394301 19 17925 15043 12510 9223 14237 1722.84589450025 1289 600 2382 14237 14216 14100 13893 33.5795844119499 25 14150 13531 11987 8743
Gran_2 bigBed bed 1320065 38.1297633071099 33 19 51 1320065 1217965 734223 224048 163729 308.033268388618 107 51 254 163729 160711 145262 112876 8.00144235431009 3 147724 64346 31266 14908 21203 1573.02641135688 967 300 2118.5 21203 21097 20573 19805 39.7785402077361 25 20631 18134 15634 12235 18900 1091.32857142857 772 203 1651 18900 18750 18046 17049 24.9239787603175 19 18222 15164 12536 9191 14229 1470.47283716354 1100 512 2042 14229 14208 14052 13817 33.2363394668719 25 14131 13498 11948 8664
Mono_1 bigBed bed 1103950 19.8173141899543 16 10 24 1103950 871576 146043 11750 158840 139.622481742634 53 28 122 158840 152869 114825 73387 6.69146950450887 3 138430 55569 25868 12382 21064 698.781285605773 418 142 891 21064 20869 19777 18408 33.1848474878977 21 20343 17609 14948 11126 18712 454.441802052159 315 98 633 18712 18448 17094 15491 20.4294201146102 15 17848 14623 11854 8022 14183 598.513925121624 417 204 764 14183 14140 13855 13366 27.1168404113902 21 14039 13249 11216 7515
Mono_2 bigBed bed 1009705 16.1674300909672 13 8 18 1009705 686422 56227 7705 153641 109.456629415325 41 21 94 153641 145593 94878 57610 6.12024265490158 3 130421 51225 23651 11441 20850 539.182206235012 313 110 667 20850 20605 19200 17526 30.3403675330169 19 20072 17252 14529 10567 18417 354.868599663355 237 77 473 18417 18072 16381 14634 18.7376058041112 14 17462 14259 11457 7487 14055 465.540305940946 309 151.5 568 14055 14012 13644 12934 24.8035401945008 19 13904 12976 10802 7025
TBSC_1 bigBed bed 1267196 39.4874092089937 34 19 53 1267196 1156401 714323 244345 158583 316.586695925793 107 50 269 158583 154853 138723 108467 7.68098516435567 3 140827 60724 29904 14492 21045 1561.28077928249 972 300 2111 21045 20917 20371 19600 38.3842646989707 24 20418 17916 15420 11988 18669 1084.77668862821 776 213 1648 18669 18507 17802 16892 24.4856737290363 18 17939 14996 12428 9074 14195 1447.97400493131 1099 513 2012 14195 14179 14025 13783 32.8717554047436 25 14101 13464 11886 8551
TBSC_2 bigBed bed 1296500 37.4334454300039 32 19 49 1296500 1202442 703845 206944 160958 302.170031933796 109 57 261 160958 157826 142907 118531 7.85860079511296 3 144215 62469 30581 14787 21116 1490.04233756393 945.5 302 2005 21116 21036 20532 19764 39.2501292475443 25 20532 18048 15551 12159 18804 1007.22101680494 745 207 1524.25 18804 18654 17970 17078 24.8545292045634 19 18085 15080 12539 9193 14240 1335.09754213483 1026 492 1849 14240 14222 14071 13836 33.2471139718743 25 14146 13529 11950 8658
ABSC_1 bigBed bed 1303825 40.1502341188426 36 21 53 1303825 1222112 782988 241002 161125 325.435252133437 118 59 277 161125 158577 145203 120750 7.90299258217783 3 145518 63114 30786 14776 21124 1636.56395569021 1019 320 2207 21124 21044 20577 19891 39.4814118531748 25 20548 18061 15585 12149 18794 1110.55033521337 802 221 1678 18794 18678 18066 17206 24.8787130014195 19 18134 15116 12513 9187 14214 1486.40045026031 1136 531.25 2049 14214 14197 14079 13859 33.2611068355139 25 14119 13506 11934 8665
ABSC_2 bigBed bed 1318171 43.0436202890217 38 23 57 1318171 1261668 840687 289180 162242 350.044945205311 128 69 298 162242 160422 148652 129282 7.98995200232716 3 146390 63719 31085 14953 21183 1764.7231742435 1113 353 2385 21183 21128 20736 20063 39.9544108661935 25 20607 18115 15653 12263 18869 1202.62064762309 881 243 1831 18869 18788 18246 17452 25.1576152673361 19 18200 15186 12598 9275 14256 1603.04250841751 1228 586 2227 14256 14247 14133 13936 33.6226824319597 25 14167 13558 12016 8748
MTAC_1 bigBed bed 1295028 37.6360179084931 33 18 50 1295028 1192366 719269 207738 161492 302.522756545216 112 54 267 161492 158384 143469 114316 7.8496800155144 3 145026 63010 30721 14688 21137 1512.38884420684 948 303 2033 21137 21038 20514 19785 39.1488931710297 25 20547 18048 15553 12128 18837 1001.40733662473 727 203 1517 18837 18681 17990 17077 24.5575416644761 18 18133 15090 12459 9101 14218 1336.41742861162 1014 481 1857 14218 14193 14033 13798 32.7836003638145 25 14108 13484 11894 8548
MTAC_2 bigBed bed 1258269 38.4215306901783 32 18 51 1258269 1145782 679010 226342 158727 305.643450704669 106 49 265 158727 155121 138959 107310 7.62686051585378 3 140704 60634 29742 14345 21066 1517.9839077186 932 292.25 2047 21066 20959 20402 19569 38.0212905954787 24 20438 17898 15358 11907 18688 1030.44691780822 726 200 1559 18688 18516 17827 16815 24.1515693181221 18 17933 14927 12360 8946 14187 1380.16352999225 1030 472 1908.5 14187 14163 14004 13758 32.3608759532638 24 14086 13425 11768 8480
CLDC_1 bigBed bed 1198897 37.7872444421831 33 21 49 1198897 1147893 689926 163521 162478 279.130029911742 107 55 242 162478 160879 146002 116365 7.26701129642199 3 145288 59699 28299 13260 21178 1430.85522712249 875 291 1889 21178 21115 20639 19855 36.1317854960756 23 20562 17888 15249 11602 18905 927.230891298598 668 196 1373 18905 18823 18171 17172 22.2642342673887 17 18162 14896 12175 8525 14263 1233.26109514127 916 443 1685 14263 14247 14118 13870 29.5960260267264 22 14138 13409 11534 7972
CLDC_2 bigBed bed 1198073 39.7627540225011 35 22 51 1198073 1148561 719085 197187 162481 293.53209298318 115 60 259 162481 161231 148032 122126 7.26199941821003 3 145264 59695 28207 13233 21181 1492.56522354941 930 310 1968 21181 21130 20696 19946 36.1287775532265 23 20548 17891 15251 11601 18917 960.377015382989 709 211 1433 18917 18851 18262 17307 22.2762210188739 17 18150 14897 12189 8529 14260 1268.33555399719 954 468 1728.25 14260 14252 14138 13920 29.6086895683202 22 14143 13405 11544 7966
EPro_1 bigBed bed 1196459 36.643192955212 32 21 47 1196459 1143281 667476 147468 162293 270.470808968964 103 56 232 162293 160852 146051 116744 7.25221807427519 3 144978 59560 28192 13236 21173 1380.3992348746 856 279 1845 21173 21119 20609 19834 36.0694646801711 23 20548 17880 15225 11577 18902 909.569939688922 663.5 189 1351 18902 18827 18183 17161 22.245780978918 17 18143 14882 12165 8519 14256 1200.135171156 895 432 1647.25 14256 14242 14119 13886 29.5652417267194 22 14136 13396 11519 7951
EPro_2 bigBed bed 1196307 35.4582786859895 31 20 46 1196307 1139504 650285 128808 162310 261.688940915532 102 53 231 162310 160551 144936 113177 7.25130296712887 3 145082 59584 28232 13243 21177 1315.72767625254 823 270 1752 21177 21107 20574 19751 36.0448371480942 23 20550 17873 15242 11590 18887 847.286016836978 625 184 1271 18887 18787 18098 17063 22.1926817727775 17 18138 14876 12161 8509 14257 1120.20046293049 848 410 1535 14257 14246 14100 13840 29.5192751696635 22 14138 13391 11528 7962
EDif_1 bigBed bed 1205071 45.3602235884857 40 27 58 1205071 1177453 843010 276666 162764 336.070906342926 131 70 294 162764 161937 151613 132208 7.30439736255212 3 145708 60017 28432 13322 21196 1701.37912813738 1054 345 2255 21196 21169 20809 20177 36.3247168303802 23 20572 17906 15270 11635 18919 1100.25926317459 801 235 1628.5 18919 18872 18429 17575 22.3737448083697 17 18178 14912 12194 8564 14267 1450.97525758744 1088 530 1979.5 14267 14260 14165 13979 29.7486182047156 22 14148 13417 11563 7985
EDif_2 bigBed bed 1199497 40.511246797616 36 23 53 1199497 1153301 745677 211912 162435 299.465084495337 116 59 265 162435 160886 147390 121800 7.27061718219723 3 145357 59721 28283 13274 21183 1502.81721191522 929 303 2005.5 21183 21127 20685 19958 36.1399163415895 23 20558 17888 15247 11602 18896 968.965654106689 708.5 207 1449.25 18896 18809 18224 17284 22.2530361179749 17 18155 14889 12170 8529 14260 1284.05525946704 966 467 1762 14260 14244 14108 13870 29.5978450989995 22 14139 13404 11535 7965

Tracks Hubs

Track Hub data was generated for export to various genome browsers. Note that you need a server that is capable of serving the tracks to the genome browser via URL. Below, instructions are provided to view the tracks in the UCSC genome browser. Of course the files can also be viewed in other browsers such as the Ensembl genome browser.

  1. Make sure you are viewing this report via the internet and not locally (simply look at the URL in the address line of your browser). If this is not the case, copy the files belonging to this report to a directory which is accessible via the internet and enter the corresponding URL in your browser. If you don't want to copy the entire report, it suffices to copy the track hub directories (see table(s) below).
  2. Make sure the mm9 subdirectories in the track hub directory (for its location be referred to the table(s) below) contain all the required bigBed/bigWig files
  3. Go to the UCSC hub connection website to the "My Hubs" tab and add the web-URL of the hub.txt file in the directory you just copied. Hint: You can use the copy link functionality of your browser (right mouse click) on the track hub txt column in the table(s) below. Don't forget to click on "Load Selected Hubs".
  4. Make sure you are looking at the correct genome (mm9). The loaded hubs should now appear below the browsing window where you can modify their display settings.
More information on UCSC track hubs can be found here. Below, you find table(s) containing the directory names for the bed/bedGraph and track hub directories for all exported data, site and region types.

bigBed

bigWig