This report was generated on 2015-03-17 by RnBeads version 0.99.19.
This section presents a summary of the data import step.
| Data type | Bisulfite sequencing data set |
| Data source | /TL/deep-projects01/archive00/RnBeads/data/reanalysis_ENCODE/bed/ |
| Genome assembly used | hg19 |
| Number of samples | 216 |
| Number of sites | 2295083 |
| Detection p-values | absent |
| coverage information is | present |
The loaded dataset includes a table of sample annotations describing the following traits:
| No. | Trait | Missing Values | Type |
| 1 | fileName | identifiers or text | |
| 2 | cell | categories or text | |
| 3 | dataVersion | categories or text | |
| 4 | dateSubmitted | categories or text | |
| 5 | obtainedBy | categories or text | |
| 6 | replicate | numbers | |
| 7 | treatment | categories or text | |
| 8 | geoSampleAccession | categories or text | |
| 9 | bedFile | identifiers or text | |
| 10 | sex | 63 | categories or text |
| 11 | tissue | categories or text | |
| 12 | karyotype | 32 | categories or text |
| 13 | tier | numbers | |
| 14 | vendorName | categories or text | |
| 15 | description | categories or text | |
| 16 | protocol | categories or text | |
| 17 | termId | categories or text | |
| 18 | lineage | 36 | categories or text |
The full sample annotation table is available as a comma-separated value file accompanying this report.