This report was generated on 2014-08-04 by RnBeads version 0.99.15.
This section presents a summary of the data import step.
| Data type | .idat files |
| Data source | /TL/deep-external01/nobackup/data_sources/TCGA/methylation/450k/idat/ |
| Number of samples | 4034 |
| Number of probes | 485577 |
| Detection p-values | present |
| bead counts information is | present |
| Quality control information | absent |
The loaded dataset includes a table of sample annotations describing the following traits:
| No. | Trait | Missing Values | Type |
| 1 | TCGA ID | identifiers or text | |
| 2 | Patient ID | categories or text | |
| 3 | barcode | identifiers or text | |
| 4 | Sentrix ID | numbers | |
| 5 | Sentrix position | categories or text | |
| 6 | Type | categories or text | |
| 7 | Study | categories or text | |
| 8 | BCR sample barcode | 1 | categories or text |
| 9 | Initial weight | 2147 | numbers |
| 10 | Freezing method | 2830 | categories or text |
| 11 | Time between clamping and freezing | 4034 | all missing |
| 12 | Time between excision and freezing | 4034 | all missing |
| 13 | BCR patient barcode | 627 | categories or text |
| 14 | Gender | 627 | categories or text |
| 15 | Ethnicity | 1279 | categories or text |
| 16 | Race | 870 | categories or text |
| 17 | Days to birth | 667 | numbers |
| 18 | Days to death | 3168 | numbers |
| 19 | Days to last known alive | 3233 | numbers |
| 20 | Vital status | 627 | categories or text |
The full sample annotation table is available as a comma-separated value file accompanying this report.