Data Import

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This section presents a summary of the data import step.

Data type Bisulfite sequencing data set
Data source /TL/deep-external01/archive00/data_sources/publication_data/ziller2013/hg19/bed
Genome assembly used hg19
Number of samples 41
Number of sites 28158385
Detection p-values absent
coverage information is present

Sample Annotation

The loaded dataset includes a table of sample annotations describing the following traits:

No. Trait Missing Values Type
1 sampleGroup_short categories or text
2 Sample_name identifiers or text
3 Source categories or text
4 bed_file identifiers or text
5 sample description categories or text
6 sample_class categories or text
7 sample_cohort categories or text
8 status categories or text
9 organ categories or text
10 germ_layer 34 categories or text
11 cmp_ESC_vs_differentiated 33 categories or text
12 cmp_colon_tumor_vs_normal 39 categories or text
13 cmp_brain_AD_vs_normal 37 categories or text
14 cmp_derGermLayer_meso_vs_ecto 36 categories or text
15 cmp_derGermLayer_meso_vs_endo 36 categories or text
16 cmp_derGermLayer_endo_vs_ecto 37 categories or text

The full sample annotation table is available as a comma-separated value file accompanying this report.