Tracks and Tables

Methylation Data

Methylation Data was exported to the following formats:

Sample summary

This section contains summary metrics for each sample as well as links to exported files. The summary table below contains the following metrics. It is also available as csv file.

Bed files for each sample contain the locations of methylation sites and regions the methylation level (in the score column). The following table links to the files. The files can be quite large in size, so you might want to consider using the "save as" option instead of opening the links directly.

sampleName sites_bigBedFile sites_bedFile sites_num sites_covgMean sites_covgMedian sites_covgPerc25 sites_covgPerc75 sites_numCovg5 sites_numCovg10 sites_numCovg30 sites_numCovg60 tiling_num tiling_covgMean tiling_covgMedian tiling_covgPerc25 tiling_covgPerc75 tiling_numCovg5 tiling_numCovg10 tiling_numCovg30 tiling_numCovg60 tiling_numSitesMean tiling_numSitesMedian tiling_numSites2 tiling_numSites5 tiling_numSites10 tiling_numSites20 genes_num genes_covgMean genes_covgMedian genes_covgPerc25 genes_covgPerc75 genes_numCovg5 genes_numCovg10 genes_numCovg30 genes_numCovg60 genes_numSitesMean genes_numSitesMedian genes_numSites2 genes_numSites5 genes_numSites10 genes_numSites20 promoters_num promoters_covgMean promoters_covgMedian promoters_covgPerc25 promoters_covgPerc75 promoters_numCovg5 promoters_numCovg10 promoters_numCovg30 promoters_numCovg60 promoters_numSitesMean promoters_numSitesMedian promoters_numSites2 promoters_numSites5 promoters_numSites10 promoters_numSites20 cpgislands_num cpgislands_covgMean cpgislands_covgMedian cpgislands_covgPerc25 cpgislands_covgPerc75 cpgislands_numCovg5 cpgislands_numCovg10 cpgislands_numCovg30 cpgislands_numCovg60 cpgislands_numSitesMean cpgislands_numSitesMedian cpgislands_numSites2 cpgislands_numSites5 cpgislands_numSites10 cpgislands_numSites20
adult_liver_replicate_1 adult_liver_replicate_1 bigBed bed 24787109 37.3518219293286 34 19 51 24787109 23091625 14643714 4347998 537066 1776.78963821638 1194 684 2146 537073 537057 536955 536581 46.1588615219055 35 537006 536268 527219 444557 50588 13089.2716582579 2908 346 13447.5 50650 50116 48333 46357 333.880546342995 69 47827 42141 37222 32550 54399 2019.0539711125 1213 525 3139 54405 54385 54223 53790 48.3716464535097 30 54300 53133 48080 36030 26632 3463.38310493711 2589 1545 4361 26635 26634 26631 26628 74.7000412959417 54 26631 26629 26620 24608
adult_liver_replicate_2 adult_liver_replicate_2 bigBed bed 25396366 36.3301719620671 36 23 48 25396366 24359133 16104908 2369347 537086 1730.48932505925 1166 654 2134 537091 537077 536995 536675 47.2934483702381 36 537043 536592 530191 457629 50895 12735.5053679025 2715 328 13283.5 50900 50573 48801 46566 341.333457621132 70 47998 42264 37320 32656 54410 1971.29174170311 1191 517 3013 54411 54393 54255 53868 48.910749724366 30 54329 53396 48689 36589 26637 3271.9887750122 2358 1369 4138 26637 26636 26636 26636 74.9131658970605 54 26636 26635 26626 24630
adult_sorted_CD4_replicate_1 adult_sorted_CD4_replicate_1 bigBed bed 25463779 35.4928783349494 34 23 47 25463779 24581527 15490958 2235407 537081 1690.60764782329 1172 689 2068 537085 537072 537025 536813 47.4189848129688 36 537045 536674 531063 460398 50908 12509.3567475271 2713 338 13171.5 50915 50675 49006 46793 342.151755401613 71 48018 42276 37325 32662 54406 1899.8809563188 1162 530 2959 54411 54403 54294 54009 48.9020580668872 30 54341 53441 48769 36623 26636 2938.20392686864 2188 1278 3749 26637 26636 26635 26634 74.8014791455494 54 26635 26634 26629 24609
adult_sorted_CD4_replicate_2 adult_sorted_CD4_replicate_2 bigBed bed 25184394 26.8682994157062 26 17 35 25184394 23338275 10012847 386618 537053 1279.43488363866 890 521 1568 537063 537043 536932 536507 46.8986823756337 36 536991 536495 529639 454448 50806 9461.36970600934 2060.5 256 9966.5 50839 50376 48153 45797 338.966226426202 70 47947 42235 37296 32612 54406 1463.41634355648 881 401 2263 54415 54390 54230 53714 48.6388643880926 30 54314 53329 48524 36419 26636 2235.67293614146 1668 955 2875 26636 26636 26636 26629 74.5246461688629 54 26636 26632 26621 24583
adult_sorted_CD8_replicate_1 adult_sorted_CD8_replicate_1 bigBed bed 25507068 38.0413260868834 37 25 50 25507068 24868651 16653251 3142988 537086 1812.04239093197 1296 769 2250 537089 537077 537023 536873 47.4995987734196 37 537043 536696 531331 461563 50929 13295.9172947087 2878 370 13786.25 50933 50757 49280 47124 342.626704868811 71 48031 42287 37332 32663 54410 1946.64539306847 1247 584 3011 54414 54398 54316 54099 48.9171995589857 30 54346 53469 48815 36650 26635 2909.88241919135 2198 1282 3721 26637 26636 26635 26634 74.7821826782295 54 26634 26633 26628 24610
adult_sorted_CD8_replicate_2 adult_sorted_CD8_replicate_2 bigBed bed 25382977 29.9413295496322 29 19 39 25382977 24151401 12242218 710929 537061 1426.00992405214 1017 605 1759 537066 537056 536973 536714 47.2685015723241 36 537018 536616 530818 459235 50894 10509.5534491218 2285 289 11077 50907 50598 48647 46316 341.269854975764 71 47998 42257 37314 32643 54415 1583.08836987082 978 460 2433 54417 54396 54281 53920 48.7697353914002 30 54340 53424 48708 36537 26636 2343.11641701393 1745 995 3006 26636 26636 26636 26631 74.581747193753 54 26636 26631 26618 24593
bcell_1 bcell_1 bigBed bed 13440377 5.182776280496 5 3 7 13440377 1693258 23406 8364 536903 241.221882953549 196 131 299 537073 537012 535871 523585 25.0287077152799 21 536453 530295 483854 298541 48310 1703.17512625518 347 47 1686 49509 46882 41151 36511 177.673607158977 34 44939 38867 33670 29045 54177 214.510088573634 152 83 306 54378 54246 52534 46604 20.4019110621095 15 53638 49690 38698 21104 25227 271.692145967863 199 108 352 26631 26619 26395 24668 22.5876412508916 17 24667 22567 18564 11582
bcell_2 bcell_2 bigBed bed 1895294 3.21620237738288 2 1 4 1895294 334616 7346 2200 416992 52.3524552882051 35 18 66 514712 475616 303832 154629 3.5294384875899 2 315104 140893 44242 6457 35190 417.826531986532 116 16 452 39691 36254 30226 26359 25.0548305433993 5 31427 25708 21011 15268 36701 52.1071706124306 30 12 66 48129 42530 26644 14984 3.54966923925028 2 27886 14325 5569 881 15051 75.2475442867937 46 20 92 22566 20901 15492 9688 4.97758756616736 2 14238 9910 4323 961
Colon_Primary_Normal Colon_Primary_Normal bigBed bed 23828345 28.0321325967355 25 14 39 23828345 21271456 10589954 1574453 536989 1328.05377527291 803 421 1583 537056 537000 536538 534543 44.3734702654798 33 536748 534135 515195 416381 50211 10027.7240451116 2195.5 243 10540 50322 49613 47336 45046 323.104637243166 67 47534 41929 37035 32419 54332 1646.09006873231 928 359 2604 54374 54319 53903 52948 47.8307056229327 29 54110 52449 47059 35453 26629 2910.74848883049 2167 1300 3672 26634 26629 26627 26625 74.5787063107707 54 26628 26626 26616 24584
Colon_Tumor_Primary Colon_Tumor_Primary bigBed bed 24455321 27.2407452494878 25 15 37 24455321 22068602 10213573 976820 537034 1294.74526378506 841 457 1586 537060 537028 536787 535618 45.5410303051742 35 536931 535549 522639 433434 50507 9683.77862445501 2093 249 10055.75 50582 49989 47809 45420 330.590811860981 68 47744 42092 37153 32490 54382 1492.61454772669 902.5 379 2312 54397 54358 54059 53321 48.185703785373 30 54233 52885 47781 35910 26629 2480.71348652099 1841 1092 3133 26634 26631 26627 26624 74.500093854413 54 26628 26624 26617 24571
colonic_mucosa colonic_mucosa bigBed bed 23714805 22.3979902246409 20 12 31 23714805 20557996 7081224 291601 537054 1061.52217569638 691 388 1279 537074 537043 536748 535197 44.1620322359026 33 536903 535098 518554 419202 50194 7907.96610868796 1739.5 206 8252.75 50327 49577 47065 44558 321.047078909669 67 47518 41910 37052 32383 54368 1251.46886830595 732 310 1945 54386 54334 53928 52959 47.462256523337 29 54168 52569 47108 35239 26634 2158.95648909412 1605 952 2728 26636 26635 26633 26630 74.2051282051282 54 26634 26631 26618 24542
fetal_adrenal fetal_adrenal bigBed bed 22265188 14.950561863908 13 8 20 22265188 16795545 1940001 69493 536788 705.5297335441 416 225 797 537044 536966 535571 527975 41.4625239479206 30 536108 529827 498323 382503 49723 5322.27457880355 1182 125 5837 50021 48762 45293 42118 303.726259395176 64 47096 41585 36744 32138 54211 1052.79932366617 465 185 1532 54350 54227 53224 50950 46.6750826901874 28 53834 51557 45615 34219 26633 2040.14368312371 1382 722 2625 26635 26635 26634 26626 74.4313924240718 54 26632 26627 26608 24544
fetal_brain fetal_brain bigBed bed 25439717 23.5893986827962 23 17 29 25439717 24341164 6198349 54702 537085 1123.495903898 842 526 1396 537092 537075 537015 536793 47.3741610082238 37 537042 536697 531243 461101 50919 8145.61163009774 1711 222 8332.75 50926 50707 48257 45711 341.780638577624 71 48015 42272 37323 32653 54418 1149.59804480053 752 375 1746 54418 54409 54297 53966 48.7298235942668 30 54352 53465 48813 36605 26637 1696.48793032248 1255 708 2174 26637 26637 26636 26628 74.4239216127942 54 26636 26632 26619 24569
fetal_heart fetal_heart bigBed bed 25531042 34.0607185834891 33 24 43 25531042 24908569 15498368 1074417 537100 1623.16124840114 1167 710 1992 537101 537095 537058 536927 47.544238255977 37 537064 536733 531436 461918 50942 11858.4720254332 2547 322 12248 50943 50753 49125 46871 342.891889239947 71 48042 42292 37330 32670 54420 1746.13993017273 1094 525 2690 54420 54408 54333 54128 48.967677324513 30 54352 53481 48840 36663 26636 2743.19518696501 2029 1170 3480.25 26636 26635 26635 26635 74.8930435109059 54 26635 26634 26630 24632
fetal_muscle_leg fetal_muscle_leg bigBed bed 22277479 18.2387375075554 16 8 25 22277479 17980095 4459666 129943 536563 856.968848158278 483 248 962 537013 536862 534935 526515 41.485400379443 30 535544 527148 492260 377843 49568 6507.67983863033 1454 151 7211.5 49904 48779 45695 42856 304.076476244677 64 47028 41593 36762 32169 54126 1327.59730569186 575 216 1960.5 54317 54157 53167 51181 46.9549981624403 28 53704 51317 45580 34430 26635 2614.7206787806 1793.5 930 3395 26635 26635 26635 26634 74.7385216052859 54 26635 26633 26620 24599
fetal_thymus fetal_thymus bigBed bed 23969550 21.6755159695519 20 11 29 23969550 20613764 6367261 206569 536971 1028.80057534935 612 334 1166 537028 536978 536549 534089 44.6364161064079 34 536788 534750 518067 421537 50353 7743.86095563542 1702 180 8462.5 50482 49620 46710 43995 324.503895441254 68 47622 41985 37063 32444 54336 1500.70049250221 683 272 2203 54380 54308 53845 52574 48.0044101433297 29 54147 52641 47239 35561 26636 2895.32088151374 1974 1046 3744 26636 26636 26636 26631 74.7666028456658 54 26636 26632 26621 24610
Frontal_cortex_AD_1 Frontal_cortex_AD_1 bigBed bed 25459909 30.4353439724268 29 21 38 25459909 24688145 12698187 463952 537061 1449.53058758474 1065 657 1731 537078 537061 537008 536850 47.4117552871609 37 537024 536670 531211 461314 50932 10459.656127956 2355 280 10791.5 50936 50738 48779 46382 341.946935651628 71 48009 42287 37319 32654 54414 1706.27244161047 938 464 2545 54416 54405 54318 54050 48.9059720690922 30 54345 53462 48817 36643 26634 2815.68806547284 2012 1012 3667 26636 26636 26634 26632 74.8452903855539 54 26634 26632 26628 24611
Frontal_cortex_AD_2 Frontal_cortex_AD_2 bigBed bed 25528135 40.4020256445846 39 28 51 25528135 25220858 18260833 3337824 537082 1924.30776835685 1429 897 2300 537095 537086 537047 536958 47.5388109915603 37 537035 536695 531470 462334 50929 13787.0530127576 3112.5 373 14015 50935 50850 49561 47374 342.831877857802 71 48031 42284 37324 32668 54411 2180.82009959757 1242 618 3236 54416 54411 54358 54220 48.969184123484 30 54345 53476 48848 36662 26636 3575.89503322446 2553 1325 4590 26637 26635 26635 26635 74.9105379734955 54 26635 26634 26630 24621
Frontal_cortex_normal_1 Frontal_cortex_normal_1 bigBed bed 25547670 38.7745161882327 38 29 47 25547670 25415490 18564151 1820159 537093 1846.86760516703 1382 876 2211 537095 537093 537061 536999 47.5751950743154 37 537055 536735 531546 462672 50943 13207.287926365 2931 352 13474 50944 50916 49739 47336 343.106324940636 71 48043 42287 37335 32666 54417 2047.75692313346 1183 601 3017.5 54417 54414 54366 54236 48.9873943403161 30 54349 53482 48867 36698 26629 3327.27406517495 2343 1228 4221.25 26633 26630 26629 26629 74.9092990952435 54 26629 26628 26625 24624
Frontal_cortex_normal_2 Frontal_cortex_normal_2 bigBed bed 25415260 28.5748133047974 27 19 36 25415260 24423141 10863088 448725 537082 1360.77622230497 1039 659 1642 537092 537080 537021 536848 47.3286129476097 36 537034 536674 531243 461207 50898 9614.1212686201 2151 268 9509 50914 50676 48607 46216 341.244578762486 70 48000 42262 37313 32648 54413 1429.85716385821 870 445 2075 54417 54405 54315 54034 48.7753583241455 30 54341 53452 48793 36598 26632 2264.08439705662 1586 845 2841 26636 26636 26634 26629 74.7062732289672 54 26632 26630 26623 24598
H1_derived_mesenchymal_stem_cells H1_derived_mesenchymal_stem_cells bigBed bed 18848480 15.5009773021398 11 5 21 18848480 13651143 3314763 360410 536592 702.488308917174 469 252 882 536991 536813 534751 526932 35.0998765599894 25 535328 522748 469998 329070 48543 5098.66037922571 1106 140 5138.25 48991 47904 45065 42325 257.428675157486 55 46013 40608 35819 31414 54083 663.243331678891 495 204 980 54290 54087 53050 50975 37.3759463432562 25 53459 49984 42858 31290 26608 919.929080943085 691 439.75 1068 26635 26634 26617 26574 57.9775124826369 44 26601 26543 26316 23405
H1_derived_neuronal_progenitor_cells H1_derived_neuronal_progenitor_cells bigBed bed 24331258 14.5111979866349 14 10 18 24331258 19184480 617320 53928 537060 690.0748771628 483 287 851 537072 537046 536845 535450 45.3100075776899 34 536995 536244 526082 438050 50573 5012.74016489988 1048 125 5233.75 50629 49611 46029 42656 328.436976274113 68 47732 42064 37142 32457 54401 730.623635561763 466.5 214 1102.75 54403 54376 54004 52683 47.4268651231165 30 54300 53062 47890 35803 26631 1103.32252130495 803 456 1385 26634 26633 26629 26625 72.980853699741 53 26630 26624 26613 24444
H1_BMP4_derived_mesendoderm_cells H1_BMP4_derived_mesendoderm_cells bigBed bed 24258658 16.8223349069724 16 11 22 24258658 20393241 1802008 43810 537057 799.094848869641 678 462 1010 537073 537057 537005 536860 45.1747467431759 36 537015 536665 531200 459585 50822 5608.90305992267 1018 149 5423 50881 50592 47544 44133 323.110230194085 65 47898 42128 37151 32476 54416 586.143334925944 494 288 810 54417 54410 54329 53992 39.6552554208012 29 54350 53446 48690 36181 26606 574.738013891496 430 267 691 26635 26632 26621 26564 52.046176371213 40 26593 26526 26260 22618
HepG2 HepG2 bigBed bed 19762961 12.5343550284659 10 5 17 19762961 13441361 1280338 91914 534856 581.404143920041 322 153 686 536967 536644 530563 506344 36.8028292524897 25 531004 508886 451402 326801 48187 4416.1485023564 901 83 4786 49046 47322 43103 39727 273.974625664776 57 45611 40327 35734 31452 53616 791.649861231092 383 130 1131 54252 53880 51589 47963 43.993164277839 26 52633 49053 42567 32160 26618 1494.53208425637 1007 543 1858 26632 26629 26621 26606 73.0924278259564 53 26615 26605 26562 24333
hippocampus_middle_replicate_1 hippocampus_middle_replicate_1 bigBed bed 25500692 43.6107987299806 41 27 57 25500692 24895911 18080638 5745253 537097 2077.45156972046 1507 907 2604 537098 537092 537063 536969 47.487725817953 37 537058 536738 531403 461778 50934 14947.0519498361 3257 426 15204 50937 50761 49461 47615 342.40406617344 71 48028 42281 37331 32669 54419 2100.12965821389 1427 676 3217 54419 54412 54353 54212 48.8795847115031 30 54355 53474 48839 36656 26634 3158.28671722481 2389 1424 3982 26634 26634 26634 26634 74.7498592183805 54 26634 26633 26627 24613
hippocampus_middle_replicate_2 hippocampus_middle_replicate_2 bigBed bed 25239113 31.4521566934663 30 19 42 25239113 23761452 12896134 1455871 537073 1497.74038105275 1069 645 1819 537083 537064 536985 536741 47.0005920652091 36 537027 536599 530337 456820 50829 10923.2672423945 2437.5 302 11276.75 50847 50487 48668 46430 339.076692112958 70 47965 42251 37290 32630 54405 1712.79159086315 1006 477 2625 54408 54395 54277 53936 48.6700845277472 30 54333 53365 48605 36438 26634 2760.76178855684 2044 1103 3592 26635 26634 26633 26632 74.6983519165071 54 26633 26631 26622 24574
HSCP_1 HSCP_1 bigBed bed 18051934 7.89666955901462 7 4 10 18051934 7068090 159071 19661 537065 370.333592129614 291 190 457 537090 537054 536641 532963 33.616460902285 27 536939 535203 515026 382123 49606 2609.98119060708 534 68 2617 50121 48198 43331 39076 239.544223561042 48 46422 40412 35336 30681 54362 341.975946343256 232 123 479 54399 54329 53533 50438 29.894230062477 21 54143 52038 44291 29210 26222 452.495719756702 319 166 578 26633 26622 26520 25823 38.3356609227766 28 26083 25385 23422 17346
HSCP_2 HSCP_2 bigBed bed 3060416 2.79698232039285 2 1 4 3060416 119296 13274 5686 518213 115.829739300756 95 63 144 537021 536708 522483 420764 5.69914709096765 5 475386 281428 78459 6529 39928 809.572032893176 160 22 801 46819 43294 35905 31260 38.8242439704064 6 34805 27538 22563 17494 46570 94.5143980741313 71 40 132 54241 53620 46058 31677 3.653197353914 3 36799 15102 3570 356 12708 105.967966050774 77 43 134.25 26590 26416 23380 16433 2.26069001764463 0 9679 4037 934 177
HUES64_CD184plus_endoderm_replicate_1 HUES64_CD184plus_endoderm_replicate_1 bigBed bed 25400978 25.352605971483 24 17 32 25400978 24142584 8418260 121903 537071 1207.84710212928 937 581 1549 537075 537062 537006 536822 47.3020221447283 37 537036 536692 531371 461824 50915 8687.36365063788 1700 236 8607 50928 50742 48526 45906 340.979512137685 70 48011 42265 37313 32651 54414 1002.7789580079 796 406 1467 54415 54405 54300 54001 47.7633958103638 30 54347 53459 48829 36631 26633 1235.07002327852 926 590 1485 26634 26632 26632 26627 72.2822765326426 53 26632 26628 26608 24466
HUES64_CD184plus_endoderm_replicate_2 HUES64_CD184plus_endoderm_replicate_2 bigBed bed 25572168 48.5998277374247 47 34 62 25572168 25454095 21073922 7203250 537072 2315.74889542212 1748 1081 2906 537074 537072 537042 536987 47.6208213322212 37 537037 536720 531567 462816 50947 16810.8593354399 3518 469 16935.5 50948 50918 50068 48247 343.392154169201 71 48046 42293 37336 32673 54415 2244.93887714785 1561 775 3442 54415 54413 54385 54296 48.985611907387 30 54352 53480 48879 36713 26633 3200.18968236089 2426 1459 4048 26633 26633 26632 26632 74.8748732965424 54 26632 26631 26627 24619
HUES64_derived_CD56plus_ectoderm_replicate_1 HUES64_derived_CD56plus_ectoderm_replicate_1 bigBed bed 25572909 51.9500414253672 51 34 68 25572909 25359734 20847094 9263556 537074 2475.41762663266 1694 978 3066 537078 537071 537035 536947 47.6221990940285 37 537040 536721 531532 462662 50943 18306.7305450335 3896 484 18953 50944 50882 49796 48008 343.415703436231 71 48047 42292 37337 32673 54415 2676.37616466048 1710 769 4151 54415 54410 54357 54204 49.0163359059169 30 54352 53480 48873 36710 26633 4213.32347088199 3160 1881 5341 26633 26633 26632 26632 74.9433870180576 54 26632 26631 26627 24625
HUES64_derived_CD56plus_ectoderm_replicate_2 HUES64_derived_CD56plus_ectoderm_replicate_2 bigBed bed 25298768 34.5110128124009 33 21 46 25298768 23933185 14888109 2185674 537070 1644.17107252443 1081 599 2031 537075 537056 536957 536536 47.1116973839282 36 537024 536513 529411 454747 50841 12236.6253385672 2586 308 12843 50852 50399 48461 46202 340.282493082403 70 47973 42251 37300 32637 54407 1841.33108517872 1143 483 2843.5 54410 54380 54217 53745 48.8330576993752 30 54316 53330 48586 36530 26633 3001.02801036308 2215 1328 3772 26633 26633 26632 26630 74.8582047527875 54 26632 26631 26625 24616
HUES64_derived_CD56plus_mesoderm_replicate_1 HUES64_derived_CD56plus_mesoderm_replicate_1 bigBed bed 25353490 35.2810240219769 34 22 47 25353490 24117180 15046484 2553697 537073 1680.89976223414 1137 642 2091 537074 537058 536981 536646 47.2135903169411 36 537031 536570 530064 456608 50862 12417.9514808927 2632 322 12781 50870 50448 48605 46428 340.857114822301 70 47995 42250 37303 32640 54411 1759.17187959424 1167 509 2729.25 54414 54392 54250 53853 48.8435869165748 30 54330 53384 48649 36567 26633 2763.64642937599 2074 1287 3404 26634 26632 26632 26631 74.8109396703833 54 26632 26630 26625 24610
HUES64_derived_CD56plus_mesoderm_replicate_2 HUES64_derived_CD56plus_mesoderm_replicate_2 bigBed bed 24813658 19.5736356481337 19 13 25 24813658 21990554 3359937 59345 537065 931.790572796806 661 394 1155 537071 537053 536924 536262 46.2083231707885 35 537016 536392 527823 446008 50620 6807.14888897613 1441.5 178 7040 50662 49976 47055 44341 334.249798850011 69 47806 42141 37225 32565 54401 980.628117247083 636 293 1491 54408 54376 54158 53381 48.1680080852628 30 54311 53183 48188 36135 26633 1517.83933466001 1115 645 1914 26633 26632 26632 26629 74.1492285167249 53 26632 26630 26616 24534
HUES64_replicate_1 HUES64_replicate_1 bigBed bed 24106878 25.5437865875297 23 13 35 24106878 21430647 9217373 699902 537032 1212.86320634395 754 410 1451 537054 537022 536747 535402 44.8921268360072 34 536921 535386 520607 425334 50352 9181.18413608863 1981 228 9684.25 50441 49728 47315 44914 326.429342386718 68 47627 42000 37081 32445 54371 1481.46256478112 845 345 2305 54392 54341 53969 53066 47.9053840499816 30 54206 52736 47423 35611 26633 2581.11579184501 1919 1134 3282 26634 26633 26632 26631 74.4902203701618 54 26632 26630 26623 24575
HUES64_replicate_2 HUES64_replicate_2 bigBed bed 25093619 32.7018808445378 30 18 44 25093619 23377666 13054320 2401959 537062 1557.51749273851 1092 632 1937 537067 537054 536960 536662 46.7296794097222 36 537011 536510 529244 452204 50746 11526.4861321032 2487 314 11775 50774 50285 48366 46232 337.834723394234 70 47916 42200 37265 32606 54405 1629.4586235413 1074 485 2522 54407 54386 54241 53835 48.4673098125689 30 54311 53310 48435 36338 26633 2553.87831343396 1947.5 1181 3194 26633 26633 26632 26631 74.4290648346285 54 26632 26631 26624 24581
human_sperm human_sperm bigBed bed 13213988 5.53283821329344 5 3 7 13213988 2733390 65300 16479 533981 256.47675737067 164 95 298 537034 536803 529849 485229 24.6072075560926 16 526687 480973 376201 219867 46482 1884.70897594989 405 42 2000 48339 45777 40149 35999 184.600153070236 39 43439 37803 33363 29346 53221 318.590458863958 166 71 471 54301 53921 50260 43210 31.8645534729879 17 51497 45279 36132 25271 26617 571.175933921532 399 221 725 26635 26634 26622 26565 57.5196155723242 41 26606 26526 26079 21798
IMR90 IMR90 bigBed bed 20269734 10.5738319560928 10 5 14 20269734 12597544 244915 35729 535970 495.189551452366 298 158 582 537017 536798 533165 515327 37.7465327879383 26 533793 518492 467258 339273 48920 3730.14228066377 813 88 4013 49522 47799 43825 40284 279.881272445395 59 46309 40953 36198 31737 53917 654.793621909751 338 132 977 54287 54056 52335 48816 44.5883131201764 26 53246 50085 43594 32672 26626 1196.49489412825 836 462 1503 26635 26633 26628 26617 72.9080602169914 53 26625 26609 26568 24341
mobilized_CD34 mobilized_CD34 bigBed bed 25486443 31.8151865818765 31 22 41 25486443 24685979 13931409 649772 537059 1515.45970976283 1082 647 1876 537067 537055 536986 536782 47.4611871465994 37 537019 536663 531140 461091 50913 11074.6814265246 2363 301 11363 50919 50689 48901 46577 342.408403163452 71 48017 42280 37326 32661 54408 1598.26208810395 1032 486 2465 54409 54399 54283 54003 48.906835722161 30 54342 53448 48798 36633 26633 2453.17826168575 1827 1078 3085 26634 26633 26632 26629 74.8039944438188 54 26632 26630 26625 24620
subcutaneous_adipocyte_nuclei subcutaneous_adipocyte_nuclei bigBed bed 20076596 11.4491266435151 10 5 16 20076596 12914761 661574 46808 535994 534.244913082985 306 164 587 536993 536788 533231 516775 37.3869239233443 26 533959 519385 468884 338453 48755 4036.42817744859 902 92 4421.25 49358 47756 43790 40442 275.595973075338 59 46267 40944 36177 31717 53874 824.530738269835 345 134 1182 54295 54028 52316 48893 44.6748805586182 26 53186 49989 43413 32320 26628 1653.34863900882 1103 571 2112 26634 26634 26631 26618 74.0084844389383 53 26626 26620 26596 24474
substantia_nigra substantia_nigra bigBed bed 24377127 24.7580297555738 23 14 34 24377127 21752595 8679914 385936 537040 1176.71242193929 761 433 1400 537056 537027 536794 535775 45.3954288097441 34 536945 535746 523602 433911 50456 8689.19918324073 1949 224 9288 50556 49867 47493 45010 328.567125223227 69 47704 42085 37171 32491 54383 1505.97270872769 804 346 2328 54396 54356 54047 53278 48.12131569276 30 54238 52913 47700 35803 26637 2649.31377407366 1939 1062 3454 26637 26636 26636 26634 74.671809888501 54 26635 26633 26623 24593

Tracks Hubs

Track Hub data was generated for export to various genome browsers. Note that you need a server that is capable of serving the tracks to the genome browser via URL. Below, instructions are provided to view the tracks in the UCSC genome browser. Of course the files can also be viewed in other browsers such as the Ensembl genome browser.

  1. Make sure you are viewing this report via the internet and not locally (simply look at the URL in the address line of your browser). If this is not the case, copy the files belonging to this report to a directory which is accessible via the internet and enter the corresponding URL in your browser. If you don't want to copy the entire report, it suffices to copy the track hub directories (see table(s) below).
  2. Make sure the hg19 subdirectories in the track hub directory (for its location be referred to the table(s) below) contain all the required bigBed/bigWig files
  3. Go to the UCSC hub connection website to the "My Hubs" tab and add the web-URL of the hub.txt file in the directory you just copied. Hint: You can use the copy link functionality of your browser (right mouse click) on the track hub txt column in the table(s) below. Don't forget to click on "Load Selected Hubs".
  4. Make sure you are looking at the correct genome (hg19). The loaded hubs should now appear below the browsing window where you can modify their display settings.
More information on UCSC track hubs can be found here. Below, you find table(s) containing the directory names for the bed/bedGraph and track hub directories for all exported data, site and region types.

bigBed