RnBeads. You can also download the corresponding datasets and create analysis reports using the following commands:
rnb.run.example(1) rnb.run.example(2) rnb.run.example(3)
Analysis of DNA methylation in a large cohort of cancer patients using the Infinium 450k assay
This example contains data from the The Cancer Genome Atlas (TCGA) assayed using the Infinium 450k assay.
Analysis of DNA methylation during adult stem cell differentiation in the blood and skin lineages using reduced representation bisulfite sequencing (RRBS)