Citing RnBeads

Please cite RnBeads as follows:

On the Shoulders of Giants

We would also like to emphasize that RnBeads makes extensive use of other R packages, and it may be appropriate to cite some of the underlying methods and contributing packages as well.

Infinium data processing

Filtering cross-reactive and SNP-overlapping probes

Background correction


Functional normalization (minfi.funnorm)

SWAN, functional normalization


Data-driven normalization approaches

Genome-wide coverage plots in quality control for bisulfite sequencing data

Differential methylation using the "limma" method

Reference-based cell type heterogeneity estimation

Reference-free correction for cell type heterogeneity